1. Díaz-Mejía JJ, et al. Morris JH. Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data. [version 1; referees: awaiting peer review]. F1000Research 2019, 8:29.
  2. Díaz-Mejía JJ, et al. Roth FR. Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics. Molecular Systems Biology .
  3. Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, et al. Emili A, Kaper JB, Pandey A. The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence. PLoS Pathog. 9:e1003403 (2013).
  4. Babu M*, Díaz-Mejía JJ*, et al. Emili A. Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. PLoS Genetics 7, e1002377 (2011).
  5. Janga SC, Díaz-Mejía JJ, Moreno-Hagelsieb G. Network-based function prediction and interactomics: the case for metabolic enzymes. Metab Eng. 13:1-10 (2011).
  6. Salazar E, Díaz-Mejía JJ, et al, Encarnación S. Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris. Appl Environ Microbiol. 76:4510 (2010).
  7. Hu P*, Janga SC*, Babu M*, Díaz-Mejía JJ*, Butland G*, et al. Emili A. Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biology 7, e96 (2009).
  8. Babu M, Musso G, Díaz-Mejía JJ, et al, Emili A. Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes. Mol Biosyst. 5:1439 (2009).
  9. Díaz-Mejía JJ, Babu M, Emili A. Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome. FEMS Microbiol Rev. 33:66 (2009).
  10. Butland G, Babu M, Díaz-Mejía JJ, et al. Emili A. eSGA: E. coli synthetic genetic array analysis. Nature Methods 5, 789-795 (2008).
  11. Hernández-Montes G*, Díaz-Mejía JJ*, Pérez-Rueda E, Segovia L. The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolutionGenome Biol. 2008 9:R95 (2008).
  12. Díaz-Mejía JJ, Amábile-Cuevas CF, Rosas I, Souza V. An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and environmental origins. Microbiology. 154:94 (2008).
  13. Díaz-Mejía JJ, Pérez-Rueda E, Segovia L. A network perspective on the evolution of metabolism by gene duplication. Genome Biology 8, R26 (2007).
  14. Díaz-Mejía JJ, Carbajal-Saucedo A, Amábile-Cuevas CF. Antibiotic resistance in oral commensal streptococci from healthy Mexicans and Cubans: resistance prevalence does not mirror antibiotic usage. FEMS Microbiol Lett. 217:173 (2002).
  15. Fuentes AM, Díaz-Mejía JJ, Maldonado-Rodríguez R, Amábile Cuevas CF. Differential activities of the SoxR protein of Escherichia coli: SoxS is not required for gene activation under iron deprivation. FEMS Microbiol Lett. 201:271 (2001).

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